Test Code LAB10408 Mycobacteriology (AFB) Respiratory Culture and Acid-Fast Stain
Performing Laboratory
Barnes-Jewish Hospital Laboratory
Methodology
Testing Algorithm:
- Positive acid-fast stain – PCR for Mycobacterium tuberculosis complex (MTBC) will be performed. Gastric Aspirate specimens will be submitted to a reference laboratory for reflex PCR test at an additional charge.
For Mycobacterium tuberculosis PCR from Direct Specimen see LAB7356.
Specimen Requirements
Acceptable Specimens:
Bronchoalveolar lavage (BAL), bronchial washing, sputum, tracheal: >5 mL in leakproof screw-capped, sterile container
Bronchial brush: brush in leakproof, screw-capped, sterile container with sterile saline.
Pleural Fluid: ≥1 mL in a leakproof screw-capped, sterile container.
Gastric aspirate: ≥5 mL in a leakproof screw-capped, sterile container.
Sputum: ≥5 mL in a leakproof screw-capped, sterile container.
Deep throat: 1 ESwab per test request
Unacceptable Specimens:
Salvia
Specimen collected with ESwab Collection Kit is unacceptable if received without fluid or swab in the transport tube.
Collection Procedure:
Bronchial or Tracheal
1. Aseptically collect ≥5 mL of fluid.
2. Place specimen in a leakproof screw-capped, sterile container.
3. Maintain sterility and transport promptly to laboratory.
4. If transport is delayed, refrigerate specimen.
Pleural fluid
1. Aseptically collect ≥1 mL of fluid.
2. Place specimen in a leakproof screw-capped, sterile container.
3. Maintain sterility and transport promptly to laboratory.
4. If transport is delayed, keep specimen at room temperature.
Gastric Aspirate
1. Aseptically collect ≥5 mL of an early-morning specimen in a leakproof screw-capped, sterile container.
2. Maintain sterility and transport promptly to laboratory.
NOTE: Gastric acid specimens must arrive in the laboratory within 4 hours of collection. In order to ensure proper processing, specimens should be received in the BJH Microbiology Laboratory by 12:00 noon.
Specimens that arrive in the lab > 4 hours post-collection, or have delayed processing, will include a comment stating, “Specimen processed greater than 4 hours after collection.” The results of these cultures should be interpreted with caution.
Sputum
1. Aseptically collect early-morning specimen avoiding oral contamination in a leakproof screw-capped, sterile container. It is optimal to collect a specimen each day for 3 consecutive days. (Saliva is not acceptable.)
2. Instruct patient to brush his/her teeth and rinse mouth well with water.
3. Have patient remove dentures.
4. Instruct patient to take a deep breath, hold it momentarily, and then cough deeply and vigorously into container. Collect ≥5 mL of discharged material.
5. Maintain sterility and transport promptly to laboratory.
6. If transport is delayed, refrigerate specimen.
Deep Throat
1. Depress tongue and rub ESwab over each tonsillar area and posterior pharynx.
2. Collect any exudate on swab.
3. Avoid touching tongue and uvula.
4. Return ESwab into transport tube following instructions on kit.
5. Maintain sterility and forward promptly at ambient temperature only.
Day(s) Test Set Up
Monday through Sunday
Cut-off time: 1200
Turnaround Time:
Acid-fast stain: Same day results are available for specimens received in the laboratory before 1200
Culture: Final report of no acid-fast bacilli isolated after 8 weeks of incubation.
Test Classification and CPT Coding
87116 - Culture, Mycobacterium
87015 – Concentration
87206 - Smear fluorescent, acid-fast (if appropriate)
Reference Values
No acid-fast bacilli isolated
Literature Reference:
Della-Latta P. Mycobacteriology and antimycobacterial susceptibility testing. In: Leber AL, Burnham C-AD, eds. Clinical Microbiology Procedures Handbook. 5th ed. Washington, DC: American Society for Microbiology; 2023.
Specimen Transport Temperature
Ambient/Refrigerate OK
Additional Information
For BJH Laboratory Use Only
Minimum Volume:
0.5 mL in a leakproof screw-capped, sterile container
Laboratory Processing Instructions:
Test performed in BJH Microbiology.