Test Code LAB7035, LAB7382 Culture, Aerobe and Anaerobe
Performing Laboratory
Barnes-Jewish Hospital Laboratory
Methodology
Gram stain is routinely performed on the following specimens if ordered: abscess, amniotic fluid, aspirate, bile, biopsy, bone, cornea, cyst, endometrium, lymph node, miscellaneous, ocular fluid, parecentesis fluid, penile, pericardial fluid, peritoneal dialysis fluid, peritoneal fluid, placenta, pleural fluid, prostate fluid, synovial fluid, tissue, valve, wound.
Specimen Requirements
Acceptable Specimens:
Abscess, aspirate, or non-superficial wound: 1 ESwab per test request, ≥1g in leakproof, screw-capped, sterile container, or ≥1 mL in anaerobic transport device
Biopsy, bone, cyst, lymph node, or tissue: ≥1g in leakproof, screw-capped, sterile container, or >1g in anaerobic transport device
Bone marrow: ≥1mL in Isolator tube
Endometrium: >1g in leakproof, screw-capped, sterile container, or >1g in anaerobic tranport device
Eye: ocular fluid (anterior chamber, aqueous humor, vitreous) - >0.5mL in leakproof, screw-capped, sterile container; (cornea or corneal scraping) - any amount of specimen in leakproof, screw-capped, sterile container.
Genital (penile only): 1 ESwab per test request or >1mL in anaerobic transport device
Fluids (amniotic, bile, CSF, ocular, paracentesis, pericardial, peritoneal, peritoneal dialysis fluid, pleural, prostatic, synovial): >1 mL in leakproof, screw-capped, sterile container, or ≥1 mL in anaerobic transport device
Placenta: >1g in leakproof, screw-capped, sterile container, or >1g in anaerobic transport device
Prosthetic: any amount in leakproof, screw-capped sterile container or anaerobic transport device
Valve: valve in leakproof, screw-capped, sterile container or anaerobic transport device
Note: Call Barnes-Jewish Hospital Laboratory Customer Service at 314-362-1470 to obtain a BD ESwab Collection Kit or anaerobic transport device.
Unacceptable Specimens:
Acceptable specimens noted above that are not received in anaerobic transport device or ESwab kit. Specimen is unacceptable if received without fluid or swab in the transport tube.
Bile, catheter tip, drainage, donor storage solution, hardware, lesion, non-sterile genital sites, ocular swab, respiratory secretions (upper and lower), stone, stool, superficial wound, ulcer, urine, or vesicle
Collection Procedure:
Note: Specimen source is required.
Abscess, Aspirate, or Non-Superficial Wound
1. Disinfect surface of abscess or wound.
2. Aseptically collect purulent material by aspiration or by using an ESwab. Frequently viable organisms are only associated with abscess wall, so adequately sample this area. If material is aspirated, clean top of anaerobic transport device with alcohol prep and allow to dry completely. Aseptically inject specimen into device. If ESwab is used return ESwab into transport tube following instructions on kit. Specimen is unacceptable if received without fluid or swab in the transport tube.
3. Maintain sterility and forward promptly.
Biopsy, Bone, Cyst, Lymph Node, or Tissue
1. Aseptically collect ≥2 g of specimen and place >1g in a leakproof, screw-capped, sterile container and >1g in an anaerobic transport device. Because there may be only a few viable organisms, specimen must be large enough to permit their recovery.
2. Maintain sterility and forward promptly.
Bone Marrow
1. Clean top of anaerobic transport device with povidone iodine and allow to dry completely.
2. Aseptically collect specimen as per normal protocol.
3. Inject > 1 mL into one, 1.5-mL Isolator tube.
4. Mix tube immediately by inverting 4 to 5 times.
5. Maintain sterility and forward promptly. Do not send via pneumatic tube system.
Endometrium
1. Aseptically collect >2g of specimen and place >1g in a leakproof, screw-capped, sterile container and >1g in an anaerobic transport device. Because there may only be a few viable organisms, specimen must be large enough to permit their recovery.
2. Maintain sterility and forward promptly.
Eye (NOT ocular swabs)
1. Cornea (corneal scraping)
A. Using sterile spatula, scrape ulcers or lesions into small, leakproof scraw-capped sterile container or Eswab collection kit.
B. Moisten specimen with a minimum amount of sterile saline.
C. Maintain sterility and forward promptly.
2. Ocular fluid (anterior chamber, aqueous humor, vitreous)
A. Aseptically collect >0.5mL of fluid.
B. Place speciment in leakproof, screw-capped, sterile container.
C. Maintain sterility and foward promptly.
Additional information on ocular specimen collection instructions can be found here.
Fluid (amniotic, bile, CSF, ocular, paracentesis, pericardial, peritoneal, peritoneal dialysis fluid, pleural, prostatic, synovial, etc.)
1. Aseptically collect ≥2mL of fluid in a screw-capped, sterile container.
2. Maintain sterility and forward promptly.
Placenta
1. Aseptically collect >1g specimen.
2. Place in leakproof, screw-capped, sterile container.
3. Maintain sterility and forward promptly.
Valve
1. Aseptically collect valve.
2. Place specimen in leakproof, screw-capped, sterile container.
3. Maintain sterility and forward promptly.
Day(s) Test Set Up
Monday through Sunday
Turnaround Time:
STAT: available for Gram stain on the following specimens only: CSF, specimens collected in the OR, transfusion reaction. Results available within 1 hour of receipt in lab.
Routine Gram stain: final report within 4 hours of specimen receipt in laboratory.
Culture: final negative, no growth or insignificant growth available within 1 to 3 days, depending on specimen type. Special request for specific organisms may require extended incubation.
Test Classification and CPT Coding
87070-Culture, aerobic (not stool, rectal swab, or urine)
87075-Culture, anaerobic
87181-Susceptibility, agar diffusion (if appropriate)
87184-Susceptibility, disk diffusion (if appropriate)
87185-Susceptibility, enzyme detection (if appropriate)
87186-Susceptibility, microdilution (if appropriate)
87205-Gram stain (if appropriate)
Reference Values
Not applicable
Literature Reference:
Jorgensen, James, et. al. Manual of Clinical Microbiology, 11th edition. ASM Press. Washington, D.C. 2015.
Specimen Transport Temperature
Ambient
Additional Information
For BJH Laboratory Use Only
Minimum Volume:
Abscess, aspirate, or non-superficial wound: 1 ESwab in ESwab transport tube or 0.5 mL in anaerobic transport device
Biopsy, bone, cyst, lymph node, or tissue: 1g in leakproof, screw-capped, sterile container and 1g in anaerobic transport device
Bone marrow: 1.5 mL in Isolator tube
Endometrium: 1g is leakproof, screw-capped, sterile container and >1g in anaerobic transport device
Eye: ocular fluid (anterior chamber, aqueous humor, vitreous) - 0.5mL in leakproof, screw-capped, sterile container; (cornea or corneal scraping) - any amount of specimen in leakproof, screw-capped, sterile container and anaerobic transport device
Genital (penile only) - 1 ESwab per test request or 1mL in anaerobic transport device
Fluids (amniotic, bile, CSF, ocular, paracentesis, pericardial, peritoneal, peritoneal dialysis fluid, pleural, prostatic, synovial): 0.5 mL in leakproof, screw-capped, sterile container and 0.5mL in anaerobic transport device
Placenta: 1g in leakproof, screw-capped, sterile container and 1g in anaerobic transport device
Laboratory Processing Instructions:
Test performed in BJH Microbiology.